Southern Blight in Processing Tomatoes: Diagnosis, Management and Monitoring


Southern blight, caused by the fungus Sclerotium rolfsii, is a destructive crown rot disease that rapidly kills tomato plants. The fungus is favored by high temperatures (over 86°F), high soil moisture, dense canopies, and frequent irrigation. Southern blight survives in soil as hardened structures called sclerotia for at least five years. Each infected plant can produce tens of thousands of sclerotia and then become more widely distributed in a field with each successive field operation. Although this disease may initially only affect a few plants in the field, southern blight can be serious enough to cause significant yield loss within a season or two. With a host range of over 500 plants, this fungus can easily persist from year to year in infected crop debris.

Southern Blight Identification

Southern blight misdiagnosis is likely if it occurs in an area where it has not historically been an issue, like the Sacramento Valley. It can be easily confused with other crown rotting diseases, like Fusarium crown rot. Severely affected plants can have vascular discoloration, which may be confused with Fusarium wilt. Accurate diagnosis is critical to effective control. You can distinguish southern blight in the field based on the following diagnostic traits, one or more of which may be present. Diagnosis requires looking at the soil around the crown of the plant, in addition to the plant itself.

  • Small tan to reddish brown sclerotia form at the base of the plant and/or in the soil around the plant.
  • White fungal mycelium (thread-like strands) growing INTO the soil. No other fungus will grow extensively in the soil (Figure 1).
  • White fan like mycelium (thread-like) growing on the crown/affected tissues.
  • Plants go from healthy to dead in less than a week—much faster than most crown rots (Figure 2).
  • Circular disease patches. From a distance, they look like bands of dead plants.
Figure 1: Fungal mycelium growing into the soil.
Figure 2 (right): Rapid plant collapse and death caused by southern blight. Photo credits: C. Swett.

If none of these characteristics are present, the best way to diagnose the disease is to put infected tissue in a plastic bag on a moist paper towel and leave at room temperature for one to two weeks. The southern blight fungus will produce distinct fan like growth within about 5-7 days (Figure 3). After about 5-14 days, it will make round white balls that turn into amber colored sclerotia (Figure 4). Both the fan growth and the sclerotia are unique to this fungus.

Figure 3: Distinct fan-like growth of southern blight.
Figure 4: Sclerotia developing and turning from white to amber-colored spheres. Photo credits: C. Swett.

Southern Blight Management

Soil Moisture

Maintaining a dry surface may help reduce losses if the fungus is detected in your field. The one advantage of drip irrigation is that the soil surface can more easily be kept dry, which inhibits infection by Sclerotium rolfsii. Avoid alternating wet and dry periods—wet followed by dry episodes can be particularly conducive to disease development.

Crop Rotation

If you have detected southern blight in your field, one of the best things you can do the following year is to plant a narrow canopy crop that you can effectively manage with fungicides to prevent sclerotia from increasing.

Rotations with non-host crops are limited because of the wide host range of the pathogen. Poor-host crops such as corn and small grains (wheat, millet, oats) can help to reduce sclerotia levels in the field.Most if not all of these crops can become infected by the fungus, but either they are not good hosts and/or the environmental conditions during the growing season are not favorable for pathogen growth. For instance, wheat can be a host, but it’s typically too cold for fungal growth during the time that wheat is grown. On the other hand, rotation with highly susceptible crops such as legumes (beans, peas and hairy vetch) can greatly increase soil infestation levels. Mustard cover crops can suppress southern blight, and may be useful for organic producers, where fumigation is not an option.

Soil Treatment

Deep plowing will bury the sclerotia and prevent it from attacking plants at the soil line. Sclerotia deeper than six inches are usually parasitized by other microbes and killed over time. Of course, plowing is not an option for fields where buried drip irrigation systems are already installed.

Sclerotia near the surface of the soil can be killed when exposed to high temperatures (105-120°F) for two to four weeks during the summer months. Solarization alone is not generally considered a viable management strategy, but when soils were solarized before the addition of biological control or a fungicide, disease was reduced by 70-100 percent compared to the same biological or chemical treatment without solarization. Make sure to prepare the soil for planting before solarizing, since cultivation and the incorporation of amendments can bring buried sclerotia back to the upper soil layers.

Monitoring Southern Blight Prevalence in Colusa County

Southern blight is not usually  considered to be a widespread problem in California—major impacts are generally limited to Kern County. However, in 2017, late spring rains in the Sacramento Valley led to later planting dates, followed by record high temperatures, even consecutive nights where the temperature remained above 70°F. The combination of late planting dates and record high temperatures in 2017 created unusually favorable conditions for the pathogen in northern California. In 2018, we conducted a project funded by the California Tomato Research Institute to monitor southern blight prevalence in Colusa County, which had five fields with positive southern blight diagnoses in 2017. The objective of this research was to quantify southern blight spread and impact in annual rotations in the region. Sarah Light-Area Agronomy Advisor was involved in this project in addition to the authors.

We sampled soil from eight fields, five of which were confirmed to have southern blight in 2016 or 2017, the other three thought to have southern blight based on grower and pest control adviser experience and observations. Six of the fields were in tomato in 2017, one was in tomato in 2016 and wheat in 2017, and one was planted with canary bean in 2017. We sampled the soil in May 2018 to get baseline data on early season southern blight sclerotia levels. The rotational crops in 2018 included sunflower and corn. Sunflower fields were checked twice monthly for southern blight symptoms once temperatures were over 90°F for seven consecutive days because sunflower is a known host of southern blight. Tomato fields near or adjacent to the monitored fields were also checked for southern blight symptoms twice a month. Soil was collected from the same spots in the fields in August/September 2018 to determine if there were any changes to southern blight sclerotia levels in the field. Cassandra Swett’s lab analyzed the soil samples using the methanol method (Rodriguez-Kabana et al 1980). Methanol kills most microbes, but not southern blight. Trays of soil were sealed in plastic bags so the moisture could stimulate germination of the southern blight sclerotia. The germination of sclerotia was evaluated at 3 and 7 days (Figure 5).

Figure 5: Southern blight sclerotia germination in soil samples. Note white thread-like mycelial growth.

Sclerotia were recovered from three fields in May 2018, possibly five fields but identification was unclear for two of the fields. The confidence level for identifying southern blight was whether the germinated growth in the trays produced sclerotia. Germination was observed in the two samples where identification was unclear, but no sclerotia were produced from these colonies. The end-of-season samples from August and September 2018 contained much higher volumes of soil than the May samples, and we recovered sclerotia from seven of the eight fields. For total number of sclerotia, five fields had increased sclerotia levels, two fields decreased, and one field had the same number of sclerotia in both the May and September samples. Southern blight increased in all three of the sunflower fields, which was expected since sunflower is a host crop. Corn fields were spread between increases, decreases, and no changes. It is worth noting though, that the only fields with decreased levels were corn fields. Also, fields where no sclerotia were recovered may contain southern blight that was not captured among our samples.

Sunflower is not recommended as a rotational crop because it is a southern blight host. Corn is likely a better choice for rotation.

We were able to recover southern blight sclerotia in fields throughout Colusa County and demonstrate southern blight increases over the growing season with certain rotational crops. Unlike 2017, southern blight was not a large issue for tomato growers in 2018. Because southern blight requires specific conditions for development to occur, it remains a disease that is a problem in the Sacramento Valley only when environmental conditions are ideal for development, especially for certain fields. Currently in 2019, due to late spring rains and high temperatures, we have identified southern blight in the Sacramento Valley from a few tomato and vineseed fields.

We would like to thank our grower and pest control adviser cooperators on this project. We would also like to thank the California Tomato Research Institute for funding this project.


Rodriguez-Kabana, R., Beute, M. K., & Backman, P. A. 1980. A method for estimating numbers of viable sclerotia of Sclerotium rolfsii in soil. Phytopathology, 70(9), 917-919.

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